Moray eel. Moray eels are legendary predators on coral reefs. Note the second set of jaws in the “throat”; these are the gill arches, which are present in all fish. Gill arches support the gills, the major respiratory organ of fish.

Lookdown. Because of its sloped head and the enlarged crest on its skull, the Lookdown appears to “look down” as it swims. These fish often swim in small schools.

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Alligator Pipefish. Pipefish may be thought of as seahorses unfurled. The numerous bony body rings are used to differentiate one species of pipefish from another.

Ox-eyed Oreo. The name Oreosoma (“mountain body”) refers to the cone-shaped bony structures on the underside of this larval specimen. Adults are more elongate, less oval, and covered with scales.

Dhiho’s Seahorse. Just over one inch long, this elegant fish is readily identified as a seahorse by its characteristic head. The body ends in a tail that can curl around and hold on to algae or coral. This species is found only in the waters around Japan.

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Roughly 10 percent of all plant species are orchids, making them the largest plant family on Earth. But habitat loss has rendered many threatened or endangered. This is partly due to their intimate relationship with the soil. Orchids depend entirely on microscopic fungi in the early stages of their lives. Without the nutrients orchids obtain by digesting these host fungi, their seeds often will not germinate and baby orchids will not grow. While researchers have known about the orchid-fungus relationship for years, very little is known about what the fungi need to survive.

Image right and below: Flowers (right) and leaves (below) of the orchid Goodyera pubescens, commonly known as the downy rattlesnake orchid, endangered in Florida. (Photos by Melissa McCormick/SERC)

Biologists based at the Smithsonian Environmental Research Center in Edgewater, Md., launched the first study to find out what helps the fungi flourish and what that means for orchids. Led by Melissa McCormick, the researchers looked at three orchid species, all endangered in one or more U.S. states. After planting orchid seeds in dozens of experimental plots, they also added particular host fungi needed by each orchid to half of the plots. Then they followed the fate of the orchids and fungi in six study sites: three in younger forests (50 to 70 years old) and three in older forests (120 to 150 years old).

Image right and below: Leaf (right)  and flowers (below) of Tipularia discolor, the cranefly orchid, endangered in New York and Massachusetts, and threatened in Michigan and Florida.

After four years they discovered orchid seeds germinated only where the fungi they needed were abundant—not merely present. In the case of one species, Liparis liliifolia (lily-leaved twayblade), seeds germinated only in plots where the team had added fungi. This suggests that this particular orchid could survive in many places, but the fungi they need do not exist in most areas of the forest.

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Image left: A desert tortoise, Gopherus agassizii. (Image by Mike Jones, courtesy Encyclopedia of Life)

“Roads are barriers to dispersal for lots of species and usually it takes many generations to show up in the genetic structure of an animal,” says one of the paper’s co-authors Emily Latch, a postdoctoral researcher at the Smithsonian Conservation Biology Institute’s Center for Conservation and Evolutionary Genetics, and now an assistant professor at the University of Wisconsin-Milwaukee. “Because tortoises have such a long life span, we didn’t think the roads would influence their genetic structure so quickly, but they did.”

The study shows for the first time that recent landscape features such as roads “can have rapid effects on the genetic structure of a localized population and are detectible almost immediately,” in as little as one generation, the scientists report. As a result, the scientists conclude, “Roads may become increasingly important in shaping the evolutionary trajectory of desert tortoise populations.”

For the study, DNA samples were taken from 859 tortoises living in an area of 23,969 acres. “A huge number of samples,” for such a small area, Latch says. Data also was taken on each animal’s sex, location, and location elevation and slope.

Image right: A tortoise in the Mojave Desert. (Image courtesy Wikipedia)

The tortoises were sampled as part of a tortoise relocation effort at Fort Irwin Army Training Center and the animals were located by having people walk map transects in the desert. They picked-up, labeled and took data and DNA samples for every tortoise encountered.

“The adult individuals were initially genotyped to develop a baseline genetic database of translocated and resident tortoises so that family groups hatched after the translocations could be identified to particular parents, and the reproductive success of translocated and resident tortoises compared,” says Smithsonian geneticist Rob Fleischer, head of the Center for Conservation and Evolutionary Genetics and senior author on the paper. “This is important to determine if translocation is really an effective mitigation step. It was serendipity that led to our finding a surprising level of genetic structure.”

Roads may inhibit gene flow in desert tortoises by the reptiles being hit by cars, picked up by travelers, and predation and disease associated with pets released by the roadside. Eroded banks and increased vegetation along desert roads also may provide places for the tortoises to burrow and forage for food, causing them to move along a road rather than to cross it.

The article “Fine-Scale Analysis Reveals Cryptic Landscape Genetic Structure in Desert Tortoises,” by Emily K. Latch, William I. Boarman, Andrew Walde, and Robert C. Fleischer appeared recently in the journal PLoS ONE.

-John Barrat

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Image left: A desert tortoise, Gopherus agassizii.  (Image by Mike Jones, courtesy Encyclopedia of Life)

“Roads are barriers to dispersal for lots of species and usually it takes many generations to show up in the genetic structure of an animal,” says one of the paper’s co-authors Emily Latch, a postdoctoral researcher at the Smithsonian Conservation Biology Institute’s Center for Conservation and Evolutionary Genetics, and now an assistant professor at the University of Wisconsin-Milwaukee. “Because tortoises have such a long life span, we didn’t think the roads would influence their genetic structure so quickly, but they did.”

The study shows for the first time that recent landscape features such as roads “can have rapid effects on the genetic structure of a localized population and are detectible almost immediately,” in as little as one generation, the scientists report. As a result, the scientists conclude, “Roads may become increasingly important in shaping the evolutionary trajectory of desert tortoise populations.”

For the study, DNA samples were taken from 859 tortoises living in an area of 23,969 acres. “A huge number of samples,” for such a small area, Latch says. Data also was taken on each animal’s sex, location, and location elevation and slope.

Image right: A tortoise in the Mojave Desert. (Image courtesy Wikipedia)

The tortoises were sampled as part of a tortoise relocation effort at Fort Irwin Army Training Center and the animals were located by having people walk map transects in the desert. They picked-up, labeled and took data and DNA samples for every tortoise encountered.

“The adult individuals were initially genotyped to develop a baseline genetic database of translocated and resident tortoises so that family groups hatched after the translocations could be identified to particular parents, and the reproductive success of translocated and resident tortoises compared,” says Smithsonian geneticist Rob Fleischer, head of the Center for Conservation and Evolutionary Genetics and senior author on the paper. “This is important to determine if translocation is really an effective mitigation step. It was serendipity that led to our finding a surprising level of genetic structure.”

Roads may inhibit gene flow in desert tortoises by the reptiles being hit by cars, picked up by travelers, and predation and disease associated with pets released by the roadside. Eroded banks and increased vegetation along desert roads also may provide places for the tortoises to burrow and forage for food, causing them to move along a road rather than to cross it.

The article “Fine-Scale Analysis Reveals Cryptic Landscape Genetic Structure in Desert Tortoises,” by Emily K. Latch, William I. Boarman, Andrew Walde, and Robert C. Fleischer appeared recently in the journal PLoS ONE.

-John Barrat

Related posts:

1. Why did the tortoise cross the road? A recent study indicates few do.
2. New study reveals desert tortoise is actually two distinct species
3. Genetic study confirms American crocodiles and critically endangered Cuban crocodiles are hybridizing in the wild

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Image left: SERC scientist João Canning Clode observes a green porcelain crab in his laboratory at the Smithsonian Environmental Research Center.

But what happens to these fair-weather travelers during a severe cold snap, such as the one that occurred in January 2010 across much of the southeastern and eastern United States? To investigate, Smithsonian Environmental Research Center scientist João Canning Clode and colleagues at the Environmental Research Center in Edgewater, Md., tested the cold-water tolerances of invasive green porcelain crabs (Petrolisthes armatus) in their laboratory. Crabs were collected in Georgia and brought to the lab where they were subjected to one of three temperature treatments. The first was a control treatment of constant moderate winter temperature. The second was treatment in which the temperature was dropped to mimic the cold snap of January 2010, and the third treatment consisted of the extreme cold temperatures of a severe winter.

Canning-Clode and his colleagues found that most of the crabs in the control treatment survived (83%), but many of the crabs in the second cold treatment (61%) and all of the crabs in the third extreme cold treatment (100%) died. Crabs that survived cold treatment number two were sluggish, possibly making them more susceptible to predation and impacting their ability to feed, the scientists determined.

The scientists determined that prolonged exposure to cold temperatures also may compromise the green porcelain crab’s ability to overcome cumulative cold events, such as the two other record cold snaps that occurred in February and March of 2010.

Image right: A green porcelain crab (Photo by Juan Antonio Baeza)

The loss of more than 60% of their population during each cold period might explain the recent dramatic decline of the green porcelain crab in Georgia in 2010, suggesting that extreme cold spells may limit or prevent the northward spread of this invasive species.

Several climate models used to predict how species will react to climate change in the next 100 years have projected a continued decline of global biodiversity and increased spread of introduced species. Many of these models focus on temperature increases, but few have evaluated the impact of severe weather like cold snaps, Canning-Clode and his colleagues write in a paper on their study recently published at PLoS ONE.

For Canning Clode “the core message of this paper is that yes, climate change is happening, but cold is also part of this change. We believe these periodic cold events will limit the range expansion of Petrolisthes armatus as well as other Caribbean creep species” –Monaca Noble, SERC

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Image right: Common basilisk lizard female, Basiliscus basiliscus. (Photo by Steven Johnson)

In a study recently published in the journal Diseases of Aquatic Organisms, scientists took skin swabs from individuals of 13 different species of lizards and 8 different species of snakes caught in western and central Panama. DNA analysis of the swabs revealed that 16 percent of the lizards and 38 percent of the snakes carried the chytrid fungus on their skin. None of the reptiles that tested positive for the disease showed signs of infection or sickness comparable to what is observed in amphibians stricken with the disease.

Image left: The anolis lizard Anolis humilis. (Photo by Shawn Mallan)

“Lizards and snakes will harbor Batrachochytrium dedrobatidis at non-pathological levels,” the researchers write, and infection in reptiles is highly plausible. “By potentially maintaining the pathogen in the environment without succumbing to the disease, these reptiles may be important vectors or reservoir hosts for Batrachochytrium dedrobatidis… and may allow virulent strains of it to spread.”

While the study presents no evidence that chytridiomycosis is lethal to reptiles, its presence on the skin of reptiles in areas that have witnessed the decline of both amphibians and reptiles in recent years is cause for concern, the scientists say.

Image right: The tropical snake Imantodes cenchoa. (Photo by Geoff Gallice)

“Reptiles as potential vectors and hosts of the amphibian pathogen Batrachochytrium dendrobatidis in Panama,” by Vanessa Kilburn and David Green of McGill University and Roberto Ibanez of the Smithsonian Tropical Research Institute, was published in December in the journal Diseases of Aquatic Organisms.

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Image right: Smithsonian scientists Mary Hagedorn and Ginnie Carter freeze coral sperm in a lab on Oahu, Hawaii. (Photo by Mike Henley)

“It turns out we can produce significant numbers of developing larvae using the thawed sperm and that those larvae actually settle,” said Mary Hagedorn, a marine biologist at SCBI. Coral settling is the process in which a free-swimming, bowling pin-shaped coral larva metamorphoses into a single polyp baby coral. “This is a huge milestone for us because if the larvae couldn’t metamorphose and settle, we wouldn’t be able to successfully use the bank for conservation efforts, which is the driving force behind this important research.”

Image left: Larvae of the coral Acropora tenuis. (Photo courtesy A. Hayward and A. Negri, Australian Institute of Marine Science)

The new frozen bank includes two reef-building species of coral, Acropora tenuis and A. millepora, both of which now reside in long-term storage at the Taronga Western Plains Zoo in Dubbo, Australia. Hagedorn has already successfully applied this technology to reefs in the Caribbean and Hawaii. Though they remain alive, the banked cells are in a stasis and researchers can thaw the frozen material in one, 50 or, in theory, even 1,000 years from now. Done properly over time, researchers can rear samples of frozen material and, if necessary, place them back into ecosystems to infuse new genes into natural populations, helping to enhance the health and viability of wild stocks. The work is the result of a partnership between SCBI, Hawaii Institute of Marine Biology, Taronga Conservation Society Australia, Australian Institute of Marine Science and Monash University.

Image right: The Great Barrier Reef coral Acropora tenuis spawning. (Photo courtesy A. Hayward and A. Negri, Australian Institute of Marine Science)

Coral reefs are living, dynamic ecosystems that provide invaluable services: they act as nursery grounds for marine fish and invertebrates, provide natural storm barriers for coastlines, store carbon dioxide from the atmosphere and are potential sources for undiscovered pharmaceuticals. Yet coral reefs are disappearing rapidly because of pollution from industrial waste, sewage, chemicals, oil spills, fertilizers, runoff and sedimentation from land; climate change; acidification; and destructive fishing practices. Researchers believe that coral reefs and the marine creatures that rely on them may die off within the next 50 to 100 years, causing the first global extinction of a worldwide ecosystem since prehistoric times. According to the Pew Center on Global Climate Change, coral reefs generate up to $30 billion of the global economy each year, with more than $1 billion going to the Australian economy. The Great Barrier Reef, which stretches 1,800 miles along the Queensland coast of Australia, includes the world’s largest collection of corals.

Image left: Smithsonian staff member Mike Henley working with frozen coral. (Photo courtesy Mike Henley)

“The wildlife on the Great Barrier Reef is so fascinating, and the size and beauty of that reef is legendary,” said Mike Henley, an animal keeper in the Zoo’s Invertebrate Exhibit. Henley helped collect and freeze the Australian samples. (Read Henley’s update from the field on the Zoo’s website.) “Our colleagues at the Australian Institute of Marine Science were so very wonderful to work with, and their facility is state-of-the-art, making research and larval care easier than at any location I have ever worked before.”

While scientists have successfully used frozen sperm from coral to fertilize fresh coral eggs, their next focus is on developing techniques to use frozen coral embryonic cells to help restore coral populations. In January, Hagedorn and her collaborators will focus on culturing frozen embryonic cells to see how long they can live.

“Right now there are no tools to help address some of the diseases most devastating to the reef,” Hagedorn said. “If we can grow embryonic cells and keep them alive, this technology could be important in battling those coral diseases.”

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Image right: Northern cardinal (Click to enlarge. All photos by Gerhard Hofmann, Hofmann & Scheffer Photography)

“Animal vocalizations are specifically adapted to both the structural and acoustic characteristics of their local environment,” said Peter Marra, a co-author of the study and an SCBI ecologist. Marra oversaw and helped design the research. “In order to survive and reproduce, it is imperative for birds to be able to transmit their signals to each other. Now it seems they may be having trouble doing so in urban areas.”

Ambient city noise masks certain lower sound frequencies, making it more difficult for birds to hear one another’s calls over long distances. In addition, hard surfaces—such as buildings—can reflect and distort higher frequency sounds by scattering sound waves and creating multiple reverberations. This can confuse birds and make it difficult for them to pinpoint the source of the call.

Image left: Gray catbird

The results of the researchers’ analysis showed that although there was some variation by species, the birds tended to sing higher notes in areas where there was general noise. The birds tended to sing lower and deeper notes, however, in areas where there were many buildings and hard surfaces. But when the two conditions combined, the birds had trouble altering their songs to accommodate both factors.

“At this point we don’t know exactly how birds adjust their songs,” said Jenélle Dowling, an SCBI intern at the time the research was conducted and lead author of the study. “We expect different species, which differ in their capacity to adjust frequency and type, to respond differently to reverberation and noise.”

By vocalizing, birds are able to identify and locate other members of their species, attract mates and defend their territory. So their ability to adapt to urban living could affect their survival. As urban areas develop rapidly, researchers will continue to investigate how sound from these busy areas affects birds and the effects of development on sound transmission.

Image right: House wren

“This is just another example of how humans continue to impact wildlife,” Marra said. “We now need studies to determine if these changes in song translate into differences in reproductive success,” he added.

This research was carried out in conjunction with the Smithsonian’s Neighborhood Nestwatch citizen science project, where participating citizens allow the researchers to use their property as study sites, as well as volunteer their time to assist with data collection.

Dowling, is currently a doctoral candidate at the Cornell Laboratory of Ornithology in New York. Marra is a conservation scientist at SCBI and advised Dowling. They worked in collaboration with researcher David Luther, who is a term assistant professor in the biology department of George Mason University in Virginia.

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